At this point, anything you do short of removing the door and reframing the opening is just covering up the problem. The rot will continue unabated until either you fix the problem or the door falls out. Carpenter ants are likely to take advantage of the rot and accelerate the problem.
As someone else mentioned, there are epoxy products intended for marine applications that can be used to encapsulate rot. "Git-Rot" is one such product. These really don't make sense in a house, due to their cost and the difficulty of getting them where they need to go.
BTW, silicone caulk is a bad choice for sealing around doors. You can't paint it and it's not intended for exterior use. There are better sealants for exterior use which are also paintable.
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Today's Featured Article - Listening to Your Tractor - by Curtis Von Fange. Years ago there was a TV show about a talking car. Unless you are from another planet, physically or otherwise, I don’t think our internal combustion buddies will talk and tell us their problems. But, on the other hand, there is a secret language that our mechanical companions readily do speak. It is an interesting form of communication that involves all the senses of the listener. In this series we are going to investigate and learn the basic rudimentary skills of understanding this lingo.
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