There's no reason to think the alternator is bad, since it's not part of the starting circuit. But you'll find out for sure once you fix the starting issue.
My guess is there's a fusible link or fuse blown somewhere. Or it might be a ground strap between the chassis and engine. But you could have damaged something else. I know nothing about Hondas and their starter circuits, but my guess is there's a relay somewhere on or near the starter that gets power from the battery and the starter switch. So that's the first place to look: Probe the terminals on the starter relay with your multimeter (on volts) while a helper turns the key. Use the starter or engine as your ground. If you don't get any voltage there, retry using the negative battery terminal as ground. What you find at the starter relay terminals should give you an idea where to look.
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Today's Featured Article - Grain Threshing in the Early 40's - by Jerry D. Coleman. How many of you can sit there and say that you have plowed with a mule? Well I would say not many, but maybe a few. This story is about the day my Grandfather Brown (true name) decided along with my parents to purchase a new Ford tractor. It wasn't really new except to us. The year was about 1967 and my father found a good used Ford 601 tractor to use on the farm instead of "Bob", our old mule. Now my grandfather had had this mule since the mid 40's and he was getting some age on him. S
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